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perf: resolve dependency directories without Node's module resolver `resolveDepDir` used `createRequire().resolve('<dep>/package.json')` for every dependency edge in the scan. Node's resolver evaluates export maps, reads the nearest package.json, and realpaths each path segment per call; in a pnpm monorepo that was two thirds of `intent list` time. Replace it with the plain `node_modules` ancestor walk the function already used as a fallback (skipping `node_modules/node_modules` like Node does), collapsing a symlinked match with one lstat and one native realpath. Discovered packages and their roots are unchanged. Also resolve a package's real root once per package in skill discovery instead of once per skill file.
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